STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH56260.1Uncharacterized membrane protein YjjP, DUF1212 family. (467 aa)    
Predicted Functional Partners:
SDH56220.1
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
       0.773
SDH56297.1
Choline/carnitine/betaine transport; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.583
SDH56192.1
Hypothetical protein.
       0.557
SDH10204.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
   0.527
SDH48402.1
LysM domain-containing protein.
  
     0.439
SDH12048.1
Alpha/beta hydrolase family protein.
  
     0.436
SDH15859.1
Competence protein ComEC.
  
    0.406
SDH24062.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
   
 0.401
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.