STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH57150.1DNA-binding transcriptional regulator, GntR family. (227 aa)    
Predicted Functional Partners:
SDH42647.1
Type I secretion C-terminal target domain (VC_A0849 subclass).
  
     0.774
SDH99059.1
DNA-binding transcriptional regulator, GntR family.
  
     0.772
SDH86711.1
DNA-binding transcriptional regulator, GntR family.
  
     0.745
SDH57176.1
Predicted arabinose efflux permease, MFS family.
       0.533
SDH45598.1
DNA-binding transcriptional regulator, FadR family.
  
  
 0.524
SDH57207.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.484
SDH57240.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.483
SDH74156.1
DNA-binding transcriptional regulator, FadR family.
  
  
 0.475
SDH12182.1
Methyltransferase small domain-containing protein; Belongs to the methyltransferase superfamily.
    
   0.430
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
    
   0.430
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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