Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDH57569.1Dye decolorizing peroxidase. (414 aa)    
Predicted Functional Partners:
SDH57536.1
Hypothetical protein.
 
  
 0.984
SDH42883.1
Iron uptake system component EfeO.
 
  
 0.933
SDH57502.1
Hypothetical protein.
 
  
 0.914
SDH42921.1
High-affinity iron transporter.
 
  
 0.762
SDH57478.1
Hypothetical protein.
 
     0.707
SDH97518.1
Hypothetical protein.
  
  
 0.691
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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