STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH58705.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (537 aa)    
Predicted Functional Partners:
SDH58806.1
Oligopeptide transport system permease protein.
 
 0.972
SDH58841.1
Oligopeptide transport system permease protein.
 
 0.937
SDH61611.1
N-terminal TM domain of oligopeptide transport permease C.
 
 
0.891
SDH78100.1
Peptide/nickel transport system permease protein.
 
 0.888
SDH57993.1
Peptide/nickel transport system permease protein.
 
 0.886
SDH89553.1
Peptide/nickel transport system permease protein.
 
 0.876
SDH71454.1
Peptide/nickel transport system permease protein.
 
 0.871
SDH41265.1
Peptide/nickel transport system permease protein.
 
 0.866
SDH58907.1
Oligopeptide transport system substrate-binding protein.
 
 
 0.850
SDH89530.1
Peptide/nickel transport system permease protein.
 
 
 0.811
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.