STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH61317.1Glycogen debranching enzyme (alpha-1,6-glucosidase). (629 aa)    
Predicted Functional Partners:
SDH94883.1
Starch phosphorylase.
  
 0.924
SDH70751.1
Phosphoglucomutase.
   
 
 0.835
SDH61250.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.822
SDH29497.1
Predicted trehalose synthase.
 
 
 0.769
SDH40484.1
Maltooligosyl trehalose hydrolase.
 
 
 0.728
SDH61218.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.716
SDH60782.1
Extracellular solute-binding protein.
 
     0.682
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.674
SDH61278.1
DNA-binding transcriptional regulator, LacI/PurR family.
 
     0.661
SDH61191.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
     0.641
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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