STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH74829.1Catechol 2,3-dioxygenase. (121 aa)    
Predicted Functional Partners:
SDH74800.1
DNA-binding transcriptional regulator, MarR family.
 
     0.917
SDH71772.1
Regulatory protein, tetR family.
  
     0.568
SDH30499.1
Methyltransferase domain-containing protein.
  
     0.473
SDH54466.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.453
SDH30520.1
Hypothetical protein.
  
    0.438
SDH30511.1
DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.
  
    0.431
SDH48282.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.402
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.