STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH76023.1Dioxygenase. (329 aa)    
Predicted Functional Partners:
SDH98949.1
Catechol 2,3-dioxygenase.
     
 0.856
SDH86661.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
     
 0.844
SDH44157.1
Phenol 2-monooxygenase.
  
 
 0.791
SDH47237.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
 
 0.791
SDH75953.1
Sec-independent protein translocase protein TatB.
 
     0.730
tatA
Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.682
tatC
Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
       0.675
SDH53074.1
Adenylosuccinate lyase.
  
 
 0.587
SDH27326.1
3-oxoacid CoA-transferase subunit B.
  
 
 0.571
SDH27348.1
3-oxoacid CoA-transferase subunit A.
  
 
 0.563
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.