STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH77011.1Imidazolonepropionase. (392 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.832
SDH77037.1
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein.
       0.781
SDH35432.1
Histidine ammonia-lyase.
  
  
 0.767
SDH76969.1
MFS transporter, putative metabolite:H+ symporter.
       0.506
SDH35314.1
Formiminoglutamase; Belongs to the arginase family.
  
 
 0.494
SDH60953.1
Agmatinase; Belongs to the arginase family.
  
 
 0.494
SDH40136.1
Formiminotetrahydrofolate cyclodeaminase.
 
 
  0.472
SDH99878.1
Cytosine/adenosine deaminase.
  
 
 0.408
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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