STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH86041.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (224 aa)    
Predicted Functional Partners:
SDH86010.1
Signal transduction histidine kinase.
 
  0.972
SDH38140.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.905
SDH39968.1
Signal transduction histidine kinase.
 
  0.896
SDH26446.1
Signal transduction histidine kinase.
 
  0.895
SDH67025.1
Signal transduction histidine kinase.
 
  0.893
SDI03404.1
Signal transduction histidine kinase.
  0.885
SDH15257.1
Signal transduction histidine kinase.
 
  0.872
SDH76068.1
Signal transduction histidine kinase.
  
  0.715
SDH41059.1
Signal transduction histidine kinase.
  
  0.603
SDH82422.1
Hypothetical protein.
    
  0.532
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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