STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH90759.1tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like. (244 aa)    
Predicted Functional Partners:
SDH48681.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
  
 0.878
SDI02209.1
Proteasome accessory factor B.
  
     0.711
SDH82290.1
Hypothetical protein.
  
     0.704
SDH90736.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
       0.653
rbpA
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.622
SDI04076.1
RNA polymerase-binding protein.
  
     0.622
SDH29724.1
Hypothetical protein.
  
     0.581
SDH56328.1
Hypothetical protein.
  
     0.576
SDH12482.1
Protein of unknown function.
  
     0.565
SDH38895.1
Hypothetical protein.
  
     0.558
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.