STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH93185.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG. (256 aa)    
Predicted Functional Partners:
SDH66375.1
L-threonine aldolase.
 
  
  0.866
SDH93213.1
Threonine/homoserine efflux transporter RhtA.
       0.773
SDH42170.1
Nitroreductase.
  
 
  0.746
SDH64934.1
L-proline dehydrogenase.
   
    0.670
SDH74920.1
L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
    0.670
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
 
      0.641
SDH93164.1
Fucose 4-O-acetylase.
       0.586
SDH13860.1
[acyl-carrier-protein] S-malonyltransferase.
    
  0.541
SDH93137.1
O-acetylhomoserine sulfhydrylase.
       0.490
SDH13941.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
    
  0.407
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.