STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH95993.1Pyridoxamine 5'-phosphate oxidase. (160 aa)    
Predicted Functional Partners:
orn
Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
       0.768
SDI01670.1
Uncharacterized conserved protein.
  
     0.642
SDH20566.1
Pyridoxal kinase; Belongs to the pyridoxine kinase family.
     
  0.580
SDH96029.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
       0.558
SDI02342.1
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist.
  
     0.523
SDH95921.1
Putative cell wall binding repeat 2.
 
     0.520
SDH46949.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.492
SDH59784.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.480
SDH59938.1
CsbD-like.
  
    0.480
SDH64870.1
Hypothetical protein.
  
     0.475
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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