STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI01033.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
SDI01010.1
CubicO group peptidase, beta-lactamase class C family.
  
    0.628
SDI01061.1
Hypothetical protein.
    
  0.579
SDI00992.1
NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family.
       0.520
SDH79113.1
Succinate dehydrogenase subunit C.
   
    0.519
SDI00967.1
Protein of unknown function.
       0.492
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.466
SDH42170.1
Nitroreductase.
   
    0.463
SDI01102.1
Transcriptional regulator, GntR family.
       0.404
SDI01129.1
ABC-2 type transport system ATP-binding protein.
       0.404
SDI01156.1
ABC-2 family transporter protein.
       0.404
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.