STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI03431.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (210 aa)    
Predicted Functional Partners:
SDI03404.1
Signal transduction histidine kinase.
  0.973
SDH38140.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.907
SDH39968.1
Signal transduction histidine kinase.
 
  0.896
SDH26446.1
Signal transduction histidine kinase.
 
  0.894
SDH67025.1
Signal transduction histidine kinase.
 
  0.892
SDH86010.1
Signal transduction histidine kinase.
  
  0.884
SDH15257.1
Signal transduction histidine kinase.
 
  0.865
SDH76068.1
Signal transduction histidine kinase.
  
  0.694
SDI03340.1
ABC-2 type transport system ATP-binding protein.
       0.605
SDI03370.1
ABC-2 type transport system permease protein.
       0.605
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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