STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_0093Conserved hypothetical protein. (481 aa)    
Predicted Functional Partners:
Pmen_0092
PFAM: GPW/gp25 family protein.
 
     0.920
Pmen_0091
PFAM: protein of unknown function DUF877.
 
     0.907
Pmen_0096
PFAM: protein of unknown function DUF1305.
 
     0.888
Pmen_0095
PFAM: protein of unknown function DUF879.
 
     0.886
Pmen_0090
PFAM: uncharacterised conserved protein UCP028301.
 
     0.885
Pmen_0089
PFAM: ImpA domain protein.
 
     0.840
Pmen_0107
PFAM: Rhs element Vgr protein.
 
   
 0.815
Pmen_0104
PFAM: ImcF domain protein; protein of unknown function DUF1215.
 
   
 0.811
Pmen_0100
Putative FHA domain containing protein; PFAM: Forkhead-associated protein.
 
     0.794
Pmen_0102
PFAM: protein of unknown function DUF876.
 
     0.786
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.