STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_0511Lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (180 aa)    
Predicted Functional Partners:
Pmen_0510
Hypothetical protein.
  
    0.947
fbp
PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase.
  
    0.603
Pmen_0509
PFAM: protein of unknown function DUF924.
       0.601
Pmen_4019
PFAM: SpoVR family protein.
   
    0.561
Pmen_1067
PFAM: protein of unknown function DUF1365.
 
     0.467
Pmen_0116
PFAM: Transglycosylase-associated protein.
  
  
 0.431
Pmen_0507
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein.
       0.427
Pmen_1068
PFAM: amine oxidase; FAD dependent oxidoreductase.
 
     0.425
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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