STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_0657PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein. (297 aa)    
Predicted Functional Partners:
Pmen_0656
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407.
 
  
 0.974
Pmen_2596
PFAM: protein of unknown function DUF403.
  
 0.863
Pmen_2597
PFAM: protein of unknown function DUF404; protein of unknown function DUF407.
 
  
 0.846
Pmen_0655
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein.
 
    
0.688
Pmen_2273
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
   0.514
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.