STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_1669Hypothetical protein. (472 aa)    
Predicted Functional Partners:
Pmen_1668
PFAM: Alginate lyase.
 
  
 0.979
Pmen_1676
Hypothetical protein.
 
  
 0.956
Pmen_1028
PFAM: Sel1 domain protein repeat-containing protein.
 
 
 0.943
Pmen_1672
PFAM: membrane bound O-acyl transferase, MBOAT family protein; Belongs to the membrane-bound acyltransferase family.
 
  
 0.933
Pmen_1026
SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis.
 
  
 0.932
Pmen_1030
Hypothetical protein.
 
  
 0.920
algL
Poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
 
  
 0.905
Pmen_1667
Hypothetical protein.
  
  
 0.905
Pmen_1675
PFAM: type IV pilus assembly PilZ.
  
  
 0.900
Pmen_1671
Hypothetical protein.
 
  
0.894
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.