STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_1670Hypothetical protein. (213 aa)    
Predicted Functional Partners:
Pmen_1675
PFAM: type IV pilus assembly PilZ.
  
  
 0.867
Pmen_1673
Alginate export porin; TC 1.B.13.
  
  
 0.855
Pmen_1671
Hypothetical protein.
  
  
 0.850
Pmen_1669
Hypothetical protein.
  
  
 0.837
Pmen_1672
PFAM: membrane bound O-acyl transferase, MBOAT family protein; Belongs to the membrane-bound acyltransferase family.
  
  
 0.834
Pmen_1668
PFAM: Alginate lyase.
  
  
 0.827
Pmen_1667
Hypothetical protein.
  
  
 0.806
Pmen_1676
Hypothetical protein.
  
  
 0.767
Pmen_1674
Hypothetical protein.
  
  
 0.766
Pmen_1677
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
  
  
 0.759
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.