STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_1815PFAM: Peptidoglycan-binding LysM. (692 aa)    
Predicted Functional Partners:
Pmen_0543
PFAM: Fimbrial assembly family protein.
  
  
 0.806
Pmen_0544
PFAM: Pilus assembly protein, PilO.
  
  
 0.775
Pmen_1635
PFAM: type IV pilus assembly PilZ.
  
     0.762
Pmen_0542
TIGRFAM: type IV pilus assembly protein PilM.
  
  
 0.757
Pmen_0545
PFAM: Pilus assembly protein, PilQ.
  
  
 0.753
Pmen_0546
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain.
  
  
 0.753
Pmen_0322
Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
     0.719
Pmen_0056
PFAM: Peptidoglycan-binding LysM.
 
   
 0.707
Pmen_4382
Hypothetical protein.
  
     0.639
Pmen_0764
PFAM: protein of unknown function DUF1631.
  
     0.629
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.