Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Pmen_2110 | Pmen_2111 | PFAM: phage integrase family protein. | Hypothetical protein. | 0.877 |
Pmen_2110 | Pmen_2112 | PFAM: phage integrase family protein. | PFAM: Zonular occludens toxin. | 0.776 |
Pmen_2110 | Pmen_2120 | PFAM: phage integrase family protein. | Hypothetical protein. | 0.475 |
Pmen_2111 | Pmen_2110 | Hypothetical protein. | PFAM: phage integrase family protein. | 0.877 |
Pmen_2111 | Pmen_2112 | Hypothetical protein. | PFAM: Zonular occludens toxin. | 0.869 |
Pmen_2111 | Pmen_2120 | Hypothetical protein. | Hypothetical protein. | 0.549 |
Pmen_2112 | Pmen_2110 | PFAM: Zonular occludens toxin. | PFAM: phage integrase family protein. | 0.776 |
Pmen_2112 | Pmen_2111 | PFAM: Zonular occludens toxin. | Hypothetical protein. | 0.869 |
Pmen_2112 | Pmen_2115 | PFAM: Zonular occludens toxin. | Hypothetical protein. | 0.402 |
Pmen_2112 | Pmen_2116 | PFAM: Zonular occludens toxin. | Hypothetical protein. | 0.412 |
Pmen_2112 | Pmen_2120 | PFAM: Zonular occludens toxin. | Hypothetical protein. | 0.771 |
Pmen_2115 | Pmen_2112 | Hypothetical protein. | PFAM: Zonular occludens toxin. | 0.402 |
Pmen_2115 | Pmen_2116 | Hypothetical protein. | Hypothetical protein. | 0.798 |
Pmen_2115 | Pmen_2117 | Hypothetical protein. | Hypothetical protein. | 0.741 |
Pmen_2115 | Pmen_2119 | Hypothetical protein. | Hypothetical protein. | 0.409 |
Pmen_2115 | Pmen_2120 | Hypothetical protein. | Hypothetical protein. | 0.409 |
Pmen_2116 | Pmen_2112 | Hypothetical protein. | PFAM: Zonular occludens toxin. | 0.412 |
Pmen_2116 | Pmen_2115 | Hypothetical protein. | Hypothetical protein. | 0.798 |
Pmen_2116 | Pmen_2117 | Hypothetical protein. | Hypothetical protein. | 0.758 |
Pmen_2116 | Pmen_2119 | Hypothetical protein. | Hypothetical protein. | 0.409 |
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