STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_3447PFAM: extracellular solute-binding protein, family 1. (341 aa)    
Predicted Functional Partners:
Pmen_3449
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.964
Pmen_3448
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.956
Pmen_3450
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
 0.879
Pmen_4001
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.869
Pmen_4000
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.859
Pmen_4202
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.854
Pmen_4203
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.854
potA-2
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.805
potA-3
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.678
Pmen_3437
PFAM: protein of unknown function DUF1185.
 
     0.542
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.