STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_0114KEGG: ecs:ECs4463 hypothetical protein. (107 aa)    
Predicted Functional Partners:
Spro_0115
PFAM: secretion protein HlyD family protein; KEGG: ent:Ent638_0138 secretion protein HlyD family protein.
 
     0.948
Spro_3693
PFAM: secretion protein HlyD family protein; KEGG: ent:Ent638_0138 secretion protein HlyD family protein.
 
     0.781
Spro_2509
KEGG: kpn:KPN_04100 hypothetical protein.
  
     0.518
Spro_3460
KEGG: kpn:KPN_02776 hypothetical protein.
  
     0.509
Spro_1131
KEGG: yen:YE3096 hypothetical protein.
  
     0.499
Spro_2511
KEGG: kpn:KPN_01798 hypothetical protein.
  
     0.493
Spro_0116
PFAM: regulatory protein LuxR; KEGG: ypi:YpsIP31758_0720 transcriptional regulator, LuxR family.
       0.479
Spro_4438
Lytic transglycosylase catalytic; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.
  
     0.474
Spro_0113
KEGG: sun:SUN_0924 acetyltransferase, GNAT family.
       0.468
Spro_0208
KEGG: stt:t3689 hypothetical protein.
  
     0.460
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.