Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Spro_0366PFAM: Mammalian cell entry related domain protein; KEGG: yen:YE1574 putative paraquat-inducible protein B. (547 aa)    
Predicted Functional Partners:
Spro_0365
TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: ypi:YpsIP31758_2550 paraquat-inducible protein A.
 
 
 0.961
Spro_0367
PFAM: protein of unknown function DUF330; KEGG: yen:YE1575 putative lipoprotein protein.
 
   
 0.948
Spro_2116
TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: yen:YE1865 hypothetical protein.
 
 
 0.844
Spro_1745
TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: yen:YE1573 putative paraquat-inducible protein A.
 
 
 0.837
Spro_4852
TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: ypi:YpsIP31758_2550 paraquat-inducible protein A.
 
 
 0.837
Spro_1747
PFAM: protein of unknown function DUF330; KEGG: yen:YE1575 putative lipoprotein protein.
 
   
 0.786
Spro_4854
PFAM: protein of unknown function DUF330; KEGG: yen:YE1575 putative lipoprotein protein.
 
   
 0.782
Spro_0364
PFAM: regulatory protein TetR; KEGG: fal:FRAAL5169 putative TetR-family transcriptional regulator.
       0.443
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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