Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Spro_0686 | Spro_0839 | PFAM: protein of unknown function DUF328; KEGG: yen:YE0603 hypothetical protein; Belongs to the UPF0246 family. | PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE0827 hypothetical protein. | 0.631 |
Spro_0768 | Spro_0839 | KEGG: ypi:YpsIP31758_3380 hypothetical protein. | PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE0827 hypothetical protein. | 0.489 |
Spro_0768 | Spro_1132 | KEGG: ypi:YpsIP31758_3380 hypothetical protein. | PFAM: Primosomal replication priB and priC; KEGG: ypi:YpsIP31758_3062 primosomal replication protein N''. | 0.770 |
Spro_0839 | Spro_0686 | PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE0827 hypothetical protein. | PFAM: protein of unknown function DUF328; KEGG: yen:YE0603 hypothetical protein; Belongs to the UPF0246 family. | 0.631 |
Spro_0839 | Spro_0768 | PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE0827 hypothetical protein. | KEGG: ypi:YpsIP31758_3380 hypothetical protein. | 0.489 |
Spro_0839 | Spro_0840 | PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE0827 hypothetical protein. | PFAM: CinA domain protein; KEGG: ypi:YpsIP31758_3241 competence/damage-inducible protein CinA domain protein; Belongs to the CinA family. | 0.455 |
Spro_0839 | Spro_1132 | PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE0827 hypothetical protein. | PFAM: Primosomal replication priB and priC; KEGG: ypi:YpsIP31758_3062 primosomal replication protein N''. | 0.435 |
Spro_0840 | Spro_0839 | PFAM: CinA domain protein; KEGG: ypi:YpsIP31758_3241 competence/damage-inducible protein CinA domain protein; Belongs to the CinA family. | PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE0827 hypothetical protein. | 0.455 |
Spro_1132 | Spro_0768 | PFAM: Primosomal replication priB and priC; KEGG: ypi:YpsIP31758_3062 primosomal replication protein N''. | KEGG: ypi:YpsIP31758_3380 hypothetical protein. | 0.770 |
Spro_1132 | Spro_0839 | PFAM: Primosomal replication priB and priC; KEGG: ypi:YpsIP31758_3062 primosomal replication protein N''. | PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE0827 hypothetical protein. | 0.435 |