STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_1653TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE1493 arginine transport system permease protein. (222 aa)    
Predicted Functional Partners:
Spro_1655
KEGG: yen:YE1495 arginine-binding periplasmic protein 1 precursor; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor.
 
 0.991
Spro_1656
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE1496 arginine transport ATP-binding protein.
 
 0.986
Spro_1652
KEGG: ypi:YpsIP31758_2639 arginine ABC transporter, periplasmic substrate-binding protein ArtJ; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor.
 
 0.976
Spro_1654
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE1494 arginine transport system permease protein.
 
 
0.972
Spro_2398
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE2043 amino acid transport system permease protein.
 
 
 0.885
Spro_2936
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: yen:YE2516 putative cystine-binding periplasmic protein.
  
 0.847
Spro_1479
KEGG: kpn:KPN_00840 glutamine ABC transporter periplasmic-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor.
  
 0.840
Spro_3323
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE1321 histidine transport ATP-binding protein HisP.
  
 0.825
Spro_3326
TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: yen:YE1318 histidine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
  
 0.798
Spro_0824
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: eca:ECA3537 amino acid-binding protein.
  
 0.785
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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