Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Spro_1968PFAM: Di-haem cytochrome c peroxidase; KEGG: stm:STM3820 putative cytochrome c peroxidase. (463 aa)    
Predicted Functional Partners:
Spro_2674
PFAM: OmpW family protein; KEGG: ypp:YPDSF_0933 hypothetical protein.
   
  
 0.572
Spro_4884
KEGG: yen:YE0024 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.559
Spro_1807
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: yen:YE1369 putative dehydrogenase, cytochrome c subunit.
 
  
 0.514
Spro_2085
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: yen:YE1086 putative cytochrome c.
 
  
 0.503
Spro_1969
PFAM: UspA domain protein; KEGG: ppr:PBPRA0125 putative universal stress protein A.
  
    0.493
norV
Beta-lactamase domain protein; Anaerobic nitric oxide reductase; uses NADH to detoxify nitric oxide (NO), protecting several 4Fe-4S NO-sensitive enzymes. Has at least 2 reductase partners, only one of which (NorW, flavorubredoxin reductase) has been identified. NO probably binds to the di-iron center; electrons enter from the NorW at rubredoxin and are transferred sequentially to the FMN center and the di-iron center. Also able to function as an aerobic oxygen reductase; In the N-terminal section; belongs to the zinc metallo- hydrolase group 3 family.
  
  
 0.480
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
      
 0.450
Spro_0586
KEGG: kpn:KPN_01908 putative receptor.
  
 
 0.424
Spro_0979
Hypothetical protein; KEGG: kpn:KPN_01908 putative receptor.
  
 
 0.424
Spro_3495
KEGG: ent:Ent638_1100 putative receptor.
  
 
 0.424
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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