STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_1968PFAM: Di-haem cytochrome c peroxidase; KEGG: stm:STM3820 putative cytochrome c peroxidase. (463 aa)    
Predicted Functional Partners:
Spro_0586
KEGG: kpn:KPN_01908 putative receptor.
  
 
 0.698
Spro_0979
Hypothetical protein; KEGG: kpn:KPN_01908 putative receptor.
  
 
 0.698
Spro_3495
KEGG: ent:Ent638_1100 putative receptor.
  
 
 0.698
Spro_1807
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: yen:YE1369 putative dehydrogenase, cytochrome c subunit.
 
  
 0.623
Spro_2085
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: yen:YE1086 putative cytochrome c.
 
  
 0.616
Spro_2560
PFAM: protein of unknown function DUF344; KEGG: bur:Bcep18194_B1834 protein of unknown function DUF344.
  
    0.554
tolB
Tol-Pal system beta propeller repeat TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. TolB occupies a key intermediary position in the Tol-Pal system because it communicates directly with both membrane-embedded components, Pal in the outer membrane and TolA in the inner membrane.
  
 
 0.541
Spro_0046
KEGG: yen:YE4166 hypothetical protein.
  
 
 0.539
Spro_4884
KEGG: yen:YE0024 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.493
Spro_2674
PFAM: OmpW family protein; KEGG: ypp:YPDSF_0933 hypothetical protein.
   
  
 0.492
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.