STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_2016Gluconate 2-dehydrogenase (acceptor); KEGG: bam:Bamb_3645 hypothetical protein. (238 aa)    
Predicted Functional Partners:
Spro_2015
Gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase; KEGG: bxe:Bxe_A4095 putative gluconate dehydrogenase.
 0.996
Spro_2137
Gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase; KEGG: kpn:KPN_02083 monooxygenase, FAD-binding; glucose-methanol-choline oxidoreductase.
 0.985
Spro_2014
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: pap:PSPA7_2974 probable cytochrome c precursor.
 
  
 0.921
Spro_3932
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pmu:PM1248 gluconolactonase.
     
 0.907
Spro_2136
Gluconate 2-dehydrogenase (acceptor); KEGG: kpn:KPN_02084 hypothetical protein.
  
  
 
0.905
ghrB
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily.
     
  0.900
Spro_4497
KEGG: stm:STM3542 gluconate kinase 2; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase.
     
 0.900
Spro_4650
KEGG: sgl:SG2151 putative gluconokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase.
     
 0.900
Spro_1808
KEGG: yen:YE1370 putative dehydrogenase subunit.
 
 
 0.771
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.765
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.