STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_2107PFAM: Spore coat U domain protein; KEGG: yen:YE1856 hypothetical protein. (310 aa)    
Predicted Functional Partners:
Spro_2108
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: yen:YE1857 probable outer membrane usher protein.
 
  
 0.949
Spro_2109
KEGG: yen:YE1858 putative chaperone protein.
 
 
 0.928
Spro_2110
PFAM: Spore coat U domain protein; KEGG: yen:YE1859 hypothetical protein.
 
     0.864
Spro_2112
PFAM: Spore coat U domain protein; KEGG: yen:YE1861 hypothetical protein.
 
     0.863
Spro_4715
PFAM: O-antigen polymerase; KEGG: yen:YE0777 putative inner membrane protein.
  
     0.632
Spro_2111
PFAM: Spore coat U domain protein; KEGG: yps:YPTB2382 hypothetical protein.
 
    
0.575
Spro_4678
PFAM: O-antigen polymerase; KEGG: asa:ASA_1459 lipid A core - O-antigen ligase.
  
     0.515
Spro_2106
PFAM: protein of unknown function DUF1480; KEGG: ypi:YpsIP31758_1660 hypothetical protein.
       0.487
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.