STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_2544PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: pfl:PFL_3507 AP endonuclease family 2 protein. (351 aa)    
Predicted Functional Partners:
Spro_4567
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO0445 putative oxidoreductase/dehydrogenase protein.
 
  
 0.840
Spro_3196
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bsu:BG12214 hypothetical protein.
 
  
 0.818
Spro_2055
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: kpn:KPN_01797 hypothetical oxidoreductase.
 
  
 0.809
Spro_2543
PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_B3091 alpha/beta hydrolase.
       0.689
Spro_2542
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_B3090 esterase/lipase/thioesterase.
       0.688
Spro_4659
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: yen:YE4027 putative thiamine pyrophosphate-dependent protein; Belongs to the TPP enzyme family.
  
  
 0.565
Spro_4660
PFAM: PfkB domain protein; KEGG: yen:YE4028 putative carbohydrate kinase.
  
  
 0.534
Spro_4662
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: yen:YE4030 hypothetical protein.
  
  
 0.533
Spro_2545
PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B3093 transcriptional regulator, TetR family.
       0.527
Spro_4569
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: rba:RB3338 probable myo-inositol 2-dehydrogenase.
 
  
 0.456
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.