Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Spro_2816PFAM: protein of unknown function DUF986; KEGG: ypi:YpsIP31758_2371 hypothetical protein. (152 aa)    
Predicted Functional Partners:
Spro_0145
KEGG: yen:YE4077 hypothetical protein.
  
     0.764
Spro_1720
KEGG: yen:YE1551 hypothetical protein.
  
     0.760
Spro_2975
PFAM: flagellar FlhE family protein; KEGG: ypi:YpsIP31758_2332 flagellar protein FlhE.
  
     0.760
Spro_2972
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: eca:ECA1700 negative regulator of flagellin synthesis.
  
     0.756
Spro_1119
KEGG: yen:YE3114 hypothetical protein.
  
     0.745
Spro_3633
Transcriptional antiterminator, BglG; PFAM: PRD domain protein; KEGG: ypa:YPA_2343 putative RNA-binding protein.
  
     0.745
secM
Secretion monitor family proten; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.741
wecH
Conserved hypothetical protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.740
Spro_3659
TIGRFAM: HAD superfamily (subfamily IF) hydrolase, YfhB; KEGG: ypi:YpsIP31758_1144 HAD hydrolase YfhB.
  
     0.739
Spro_1103
PFAM: extracellular solute-binding protein family 5; KEGG: yen:YE3126 hypothetical protein.
  
     0.737
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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