STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_3003PFAM: conserved hypothetical protein; KEGG: azo:azo3895 putative cytoplasmic protein,SciH. (178 aa)    
Predicted Functional Partners:
Spro_3004
PFAM: protein of unknown function DUF877; KEGG: bbr:BB0801 hypothetical protein.
 
 0.998
Spro_1784
PFAM: protein of unknown function DUF877; KEGG: ent:Ent638_2915 protein of unknown function DUF877.
 
 0.981
Spro_2999
PFAM: OmpA/MotB domain protein; KEGG: bbr:BB0815 hypothetical protein.
 
  
 0.977
Spro_3009
PFAM: virulence protein SciE type; KEGG: bbr:BB0803 hypothetical protein.
 
   0.975
Spro_3002
PFAM: ImpA domain protein; KEGG: bbr:BB0799 hypothetical protein.
 
  
 0.968
Spro_3005
PFAM: protein of unknown function DUF796; KEGG: aav:Aave_1465 protein of unknown function DUF796.
 
 
 0.962
Spro_3001
KEGG: bbr:BB0817 hypothetical protein.
 
  
 0.961
Spro_2998
PFAM: protein of unknown function DUF876; KEGG: bbr:BB0814 hypothetical protein.
 
  
 0.945
Spro_3019
PFAM: protein of unknown function DUF796; KEGG: bpa:BPP0716 hypothetical protein.
 
 
 0.938
Spro_3010
PFAM: GPW/gp25 family protein; KEGG: bbr:BB0804 hypothetical protein.
 
  
 0.930
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.