Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Spro_3003PFAM: conserved hypothetical protein; KEGG: azo:azo3895 putative cytoplasmic protein,SciH. (178 aa)    
Predicted Functional Partners:
Spro_3004
PFAM: protein of unknown function DUF877; KEGG: bbr:BB0801 hypothetical protein.
 
 0.999
Spro_1784
PFAM: protein of unknown function DUF877; KEGG: ent:Ent638_2915 protein of unknown function DUF877.
 
 0.990
Spro_3009
PFAM: virulence protein SciE type; KEGG: bbr:BB0803 hypothetical protein.
 
   0.982
Spro_2999
PFAM: OmpA/MotB domain protein; KEGG: bbr:BB0815 hypothetical protein.
 
  
 0.970
Spro_2998
PFAM: protein of unknown function DUF876; KEGG: bbr:BB0814 hypothetical protein.
 
  
 0.951
Spro_3010
PFAM: GPW/gp25 family protein; KEGG: bbr:BB0804 hypothetical protein.
 
  
 0.943
Spro_3001
KEGG: bbr:BB0817 hypothetical protein.
 
  
 0.940
Spro_3005
PFAM: protein of unknown function DUF796; KEGG: aav:Aave_1465 protein of unknown function DUF796.
 
 
 0.928
Spro_3002
PFAM: ImpA domain protein; KEGG: bbr:BB0799 hypothetical protein.
 
  
 0.919
Spro_1785
PFAM: protein of unknown function DUF876; KEGG: kpn:KPN_01324 hypothetical protein.
 
  
 0.912
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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