STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_3205Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pae:PA2921 probable transcriptional regulator. (317 aa)    
Predicted Functional Partners:
Spro_3737
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1556 transcriptional regulator, LysR family.
  
     0.761
Spro_1486
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE2048 LysR-family transcriptional regulatory protein.
  
     0.754
Spro_4256
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sec:SC2417 regulator for XapA (LysR family); Belongs to the LysR transcriptional regulatory family.
  
     0.754
Spro_1339
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B0248 transcriptional regulator, LysR family.
  
     0.732
Spro_2282
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE2022 probable LysR-family transcriptional regulator.
  
     0.723
Spro_2354
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpe:RPE_2870 transcriptional regulator, LysR family.
  
     0.722
Spro_0526
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE0483 putative LysR-family transcriptional regulatory protein.
  
     0.718
Spro_3225
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE1457 putative LysR-family transcriptional regulatory protein.
  
     0.714
Spro_3394
Transcriptional regulator, LysR family; TIGRFAM: D-serine deaminase transcriptional activator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ecv:APECO1_4172 D-serine deaminase activator.
  
     0.699
hdfR
Transcriptional regulator, LysR family; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.699
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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