Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Spro_3207PFAM: extracellular solute-binding protein family 3; KEGG: bur:Bcep18194_B2597 ABC amino acid transporter, periplasmic ligand binding protein. (263 aa)    
Predicted Functional Partners:
Spro_2398
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE2043 amino acid transport system permease protein.
 
 0.957
Spro_3324
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE1320 histidine transport system permease protein HisM.
 
 
 0.957
Spro_3325
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ypi:YpsIP31758_1429 histidine ABC transporter, permease protein HisQ.
 
 0.957
Spro_2399
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_3087 histidine transport system membrane protein M.
 
 
  0.955
Spro_3323
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE1321 histidine transport ATP-binding protein HisP.
 
 
 0.954
Spro_2397
PFAM: extracellular solute-binding protein family 3; KEGG: yen:YE2044 amino acid-binding periplasmic protein precursor.
  
  
 
0.907
Spro_3326
TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: yen:YE1318 histidine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
  
  
 
0.904
Spro_2935
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ypi:YpsIP31758_2273 amino acid ABC transporter, permease protein.
   0.814
Spro_1654
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE1494 arginine transport system permease protein.
 
 
 0.792
Spro_1478
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_00839 glutamine ABC transporter permease component.
   0.786
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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