Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Spro_3208PFAM: protein of unknown function DUF496; KEGG: ypi:YpsIP31758_2417 hypothetical protein; Belongs to the UPF0265 family. (105 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
    
   0.761
Spro_0179
PFAM: adenylate cyclase class-I; KEGG: yen:YE0189 adenylate cyclase; Belongs to the adenylyl cyclase class-1 family.
  
     0.703
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.660
zapB
Protein of unknown function DUF904; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
    0.654
mukE
Chromosome segregation and condensation protein MukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF.
  
     0.652
Spro_3264
PFAM: porin Gram-negative type; KEGG: yen:YE1401 outer membrane protein C, porin; Belongs to the Gram-negative porin family.
  
     0.631
viaA
SMART: von Willebrand factor type A; KEGG: ypi:YpsIP31758_0004 protein ViaA.
  
     0.630
Spro_1458
PFAM: porin Gram-negative type; KEGG: yen:YE2856 outer membrane protein C2; Belongs to the Gram-negative porin family.
  
     0.628
Spro_2839
PFAM: porin Gram-negative type; KEGG: yen:YE2463 outer membrane porin protein.
  
     0.619
Spro_1730
PFAM: porin Gram-negative type; KEGG: stm:STM1473 outer membrane protein N precursor; Belongs to the Gram-negative porin family.
  
     0.609
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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