STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_3208PFAM: protein of unknown function DUF496; KEGG: ypi:YpsIP31758_2417 hypothetical protein; Belongs to the UPF0265 family. (105 aa)    
Predicted Functional Partners:
Spro_0179
PFAM: adenylate cyclase class-I; KEGG: yen:YE0189 adenylate cyclase; Belongs to the adenylyl cyclase class-1 family.
  
     0.703
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.660
mukE
Chromosome segregation and condensation protein MukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF.
  
     0.652
zapB
Protein of unknown function DUF904; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
    0.647
Spro_3264
PFAM: porin Gram-negative type; KEGG: yen:YE1401 outer membrane protein C, porin; Belongs to the Gram-negative porin family.
  
     0.631
viaA
SMART: von Willebrand factor type A; KEGG: ypi:YpsIP31758_0004 protein ViaA.
  
     0.630
Spro_1458
PFAM: porin Gram-negative type; KEGG: yen:YE2856 outer membrane protein C2; Belongs to the Gram-negative porin family.
  
     0.628
Spro_2839
PFAM: porin Gram-negative type; KEGG: yen:YE2463 outer membrane porin protein.
  
     0.619
Spro_1730
PFAM: porin Gram-negative type; KEGG: stm:STM1473 outer membrane protein N precursor; Belongs to the Gram-negative porin family.
  
     0.609
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.603
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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