Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Spro_3209KEGG: yen:YE2756 hypothetical protein. (355 aa)    
Predicted Functional Partners:
Spro_3710
KEGG: yen:YE0937 hypothetical protein.
  
     0.741
Spro_0780
Signaling modulator of AmpD, AmpE; KEGG: ypi:YpsIP31758_3367 AmpE-like protein.
  
     0.708
aaeX
PFAM: protein of unknown function DUF1656; KEGG: stm:STM3366 putative inner membrane protein.
 
  
 0.695
Spro_1893
KEGG: yen:YE1623 hypothetical protein.
  
     0.694
tsgA
PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE3963 conserved integral membrane protein.
  
     0.684
Spro_4581
TIGRFAM: integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: ent:Ent638_3785 integral membrane protein, YccS/YhfK family.
 
     0.673
Spro_2288
PFAM: protein of unknown function DUF1283; KEGG: yen:YE2026 hypothetical protein; Belongs to the UPF0482 family.
  
     0.658
Spro_2800
PFAM: protein of unknown function DUF1439; KEGG: yen:YE2419 putative lipoprotein.
  
     0.653
Spro_2681
PFAM: major facilitator superfamily MFS_1; KEGG: spc:Sputcn32_1658 major facilitator superfamily MFS_1.
  
     0.650
Spro_2124
PFAM: membrane-bound metal-dependent hydrolase; KEGG: yen:YE1880 hypothetical protein.
  
   
 0.647
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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