Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Spro_0568 | Spro_3692 | KEGG: kpn:KPN_04693 hypothetical protein. | KEGG: vco:VC0395_A0339 putative transcriptional regulator. | 0.703 |
Spro_0568 | Spro_4311 | KEGG: kpn:KPN_04693 hypothetical protein. | PFAM: HipA domain protein; KEGG: mmw:Mmwyl1_4376 HipA domain protein. | 0.421 |
Spro_0664 | Spro_3692 | PFAM: HipA domain protein; KEGG: yen:YE0575 putative DNA-binding protein. | KEGG: vco:VC0395_A0339 putative transcriptional regulator. | 0.692 |
Spro_3691 | Spro_3692 | PFAM: HipA domain protein; KEGG: vvy:VV0798 hypothetical protein. | KEGG: vco:VC0395_A0339 putative transcriptional regulator. | 0.984 |
Spro_3692 | Spro_0568 | KEGG: vco:VC0395_A0339 putative transcriptional regulator. | KEGG: kpn:KPN_04693 hypothetical protein. | 0.703 |
Spro_3692 | Spro_0664 | KEGG: vco:VC0395_A0339 putative transcriptional regulator. | PFAM: HipA domain protein; KEGG: yen:YE0575 putative DNA-binding protein. | 0.692 |
Spro_3692 | Spro_3691 | KEGG: vco:VC0395_A0339 putative transcriptional regulator. | PFAM: HipA domain protein; KEGG: vvy:VV0798 hypothetical protein. | 0.984 |
Spro_3692 | Spro_4311 | KEGG: vco:VC0395_A0339 putative transcriptional regulator. | PFAM: HipA domain protein; KEGG: mmw:Mmwyl1_4376 HipA domain protein. | 0.712 |
Spro_4311 | Spro_0568 | PFAM: HipA domain protein; KEGG: mmw:Mmwyl1_4376 HipA domain protein. | KEGG: kpn:KPN_04693 hypothetical protein. | 0.421 |
Spro_4311 | Spro_3692 | PFAM: HipA domain protein; KEGG: mmw:Mmwyl1_4376 HipA domain protein. | KEGG: vco:VC0395_A0339 putative transcriptional regulator. | 0.712 |