Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Spro_4606TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ypi:YpsIP31758_3967 protein transporter HofQ. (413 aa)    
Predicted Functional Partners:
Spro_4609
PFAM: Fimbrial assembly family protein; KEGG: ypp:YPDSF_0073 membrane protein.
  
 
 0.986
Spro_4610
KEGG: yps:YPTB3755 hypothetical protein.
 
 
 0.963
Spro_0776
PFAM: type II secretion system protein; KEGG: ypi:YpsIP31758_3372 putative protein transport protein HofC.
 
 
 
 0.847
Spro_4249
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: eca:ECA3107 general secretion pathway protein F.
 
 
 
 0.818
Spro_0777
PFAM: type II secretion system protein E; KEGG: eca:ECA3799 protein transport protein.
 
 
 
 0.816
Spro_4250
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 
 0.815
Spro_4607
KEGG: eca:ECA4095 hypothetical protein.
       0.775
Spro_4608
Hypothetical protein.
       0.773
Spro_4241
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.762
Spro_2836
PFAM: Peptidoglycan-binding LysM; transport-associated; SMART: Transport-associated and nodulation region; KEGG: stm:STM2795 hypothetical protein.
   
 
 0.736
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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