Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Spro_4875Carbohydrate-binding family V/XII; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Carbohydrate-binding family V/XII; KEGG: mxa:MXAN_1967 putative peptidase, S8 (subtilisin) family. (647 aa)    
Predicted Functional Partners:
Spro_3478
PFAM: chitin-binding domain 3 protein; KEGG: bca:BCE_2855 chitin binding protein, putative.
  
   
 0.503
Spro_0137
Chitinase; KEGG: sbl:Sbal_3083 chitinase; PFAM: glycoside hydrolase family 18; Chitinase A domain protein; SMART: PKD domain containing protein; chitinase II; Belongs to the glycosyl hydrolase 18 family.
 
     0.493
Spro_1223
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Fibronectin type III domain protein; KEGG: pfl:PFL_2091 chitinase; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.452
Spro_3476
Chitinase; KEGG: sde:Sde_3870 chitinase; PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
  
 
 
 0.440
Spro_3105
PFAM: chitin-binding domain 3 protein; KEGG: vco:VC0395_1137 putative chitinase.
  
     0.435
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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