STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR31335.1Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. (584 aa)    
Predicted Functional Partners:
SFR31332.1
Glycosyl transferase family 2.
 
     0.777
SFR31333.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.775
SFR31334.1
Glycosyltransferase.
       0.741
SFR31330.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.673
SFR31336.1
Capsular exopolysaccharide family.
     
 0.671
SFR31326.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.624
SFR31325.1
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase.
 
    0.614
SFR31331.1
Putative colanic acid biosynthesis acetyltransferase WcaF.
       0.613
SFR31328.1
Glycosyltransferase involved in cell wall bisynthesis; Manually curated.
  
    0.612
SFR31329.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.612
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.