Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR31412.1 | SFR31414.1 | SAMN04490243_0214 | SAMN04490243_0215 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | Hypothetical protein. | 0.824 |
SFR31412.1 | SFR31418.1 | SAMN04490243_0214 | SAMN04490243_0217 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.624 |
SFR31412.1 | SFR31420.1 | SAMN04490243_0214 | SAMN04490243_0218 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | WbqC-like protein family protein; Manually curated. | 0.577 |
SFR31412.1 | SFR31422.1 | SAMN04490243_0214 | SAMN04490243_0219 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | Hypothetical protein. | 0.517 |
SFR31414.1 | SFR31412.1 | SAMN04490243_0215 | SAMN04490243_0214 | Hypothetical protein. | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | 0.824 |
SFR31414.1 | SFR31418.1 | SAMN04490243_0215 | SAMN04490243_0217 | Hypothetical protein. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.724 |
SFR31414.1 | SFR31420.1 | SAMN04490243_0215 | SAMN04490243_0218 | Hypothetical protein. | WbqC-like protein family protein; Manually curated. | 0.717 |
SFR31414.1 | SFR31422.1 | SAMN04490243_0215 | SAMN04490243_0219 | Hypothetical protein. | Hypothetical protein. | 0.518 |
SFR31414.1 | SFR32765.1 | SAMN04490243_0215 | SAMN04490243_0548 | Hypothetical protein. | Beta-barrel assembly machine subunit BamA. | 0.550 |
SFR31418.1 | SFR31412.1 | SAMN04490243_0217 | SAMN04490243_0214 | Signal peptidase I; Belongs to the peptidase S26 family. | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | 0.624 |
SFR31418.1 | SFR31414.1 | SAMN04490243_0217 | SAMN04490243_0215 | Signal peptidase I; Belongs to the peptidase S26 family. | Hypothetical protein. | 0.724 |
SFR31418.1 | SFR31420.1 | SAMN04490243_0217 | SAMN04490243_0218 | Signal peptidase I; Belongs to the peptidase S26 family. | WbqC-like protein family protein; Manually curated. | 0.797 |
SFR31418.1 | SFR31422.1 | SAMN04490243_0217 | SAMN04490243_0219 | Signal peptidase I; Belongs to the peptidase S26 family. | Hypothetical protein. | 0.734 |
SFR31418.1 | SFR32765.1 | SAMN04490243_0217 | SAMN04490243_0548 | Signal peptidase I; Belongs to the peptidase S26 family. | Beta-barrel assembly machine subunit BamA. | 0.650 |
SFR31418.1 | SFR34473.1 | SAMN04490243_0217 | SAMN04490243_0837 | Signal peptidase I; Belongs to the peptidase S26 family. | DNA ligase-1. | 0.791 |
SFR31418.1 | SFR36802.1 | SAMN04490243_0217 | SAMN04490243_1186 | Signal peptidase I; Belongs to the peptidase S26 family. | Lipoprotein-releasing system permease protein. | 0.638 |
SFR31418.1 | atpE | SAMN04490243_0217 | SAMN04490243_1107 | Signal peptidase I; Belongs to the peptidase S26 family. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.647 |
SFR31418.1 | lepA | SAMN04490243_0217 | SAMN04490243_1181 | Signal peptidase I; Belongs to the peptidase S26 family. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.650 |
SFR31418.1 | secF | SAMN04490243_0217 | SAMN04490243_2648 | Signal peptidase I; Belongs to the peptidase S26 family. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.704 |
SFR31420.1 | SFR31412.1 | SAMN04490243_0218 | SAMN04490243_0214 | WbqC-like protein family protein; Manually curated. | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | 0.577 |
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