STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR32752.1Periplasmic chaperone for outer membrane proteins Skp. (169 aa)    
Predicted Functional Partners:
SFR32760.1
Chaperone for outer membrane proteins, Skp family.
 
     0.870
SFR32765.1
Beta-barrel assembly machine subunit BamA.
 
    0.859
SFR32777.1
Outer membrane protein beta-barrel domain-containing protein.
 
 
   0.763
SFR32154.1
Surface antigen.
  
    0.710
SFR31414.1
Hypothetical protein.
  
     0.704
SFR33340.1
Protein of unknown function.
  
     0.691
SFR39215.1
Hypothetical protein.
  
     0.676
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.656
SFR31434.1
Tetratricopeptide repeat-containing protein.
  
    0.638
SFR33150.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.634
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.