STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR34135.1Hypothetical protein. (671 aa)    
Predicted Functional Partners:
SFR34140.1
PGAP1-like protein.
 
     0.946
SFR48975.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.758
SFR34146.1
Hypothetical protein.
       0.740
SFR34126.1
Hypothetical protein; Manually curated.
 
     0.739
SFR48966.1
Galactose oxidase, central domain.
  
     0.734
SFR53237.1
Membrane dipeptidase (Peptidase family M19).
  
     0.721
SFR47993.1
Hypothetical protein.
  
     0.662
SFR34169.1
Protein of unknown function.
  
     0.652
SFR53247.1
Hypothetical protein.
  
     0.641
SFR36411.1
Sulfotransferase domain-containing protein.
  
     0.607
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.