Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR34323.1 | SFR34335.1 | SAMN04490243_0814 | SAMN04490243_0816 | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. | seryl-tRNA synthetase. | 0.715 |
SFR34323.1 | rsmA | SAMN04490243_0814 | SAMN04490243_0819 | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.544 |
SFR34335.1 | SFR34323.1 | SAMN04490243_0816 | SAMN04490243_0814 | seryl-tRNA synthetase. | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. | 0.715 |
SFR34335.1 | SFR34746.1 | SAMN04490243_0816 | SAMN04490243_0880 | seryl-tRNA synthetase. | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | 0.719 |
SFR34335.1 | SFR34765.1 | SAMN04490243_0816 | SAMN04490243_0883 | seryl-tRNA synthetase. | Amino acid adenylation domain-containing protein. | 0.827 |
SFR34335.1 | SFR52833.1 | SAMN04490243_0816 | SAMN04490243_2642 | seryl-tRNA synthetase. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.712 |
SFR34335.1 | alaS | SAMN04490243_0816 | SAMN04490243_1596 | seryl-tRNA synthetase. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.708 |
SFR34335.1 | lysS | SAMN04490243_0816 | SAMN04490243_1611 | seryl-tRNA synthetase. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.753 |
SFR34335.1 | pheS | SAMN04490243_0816 | SAMN04490243_1263 | seryl-tRNA synthetase. | phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.805 |
SFR34335.1 | rsmA | SAMN04490243_0816 | SAMN04490243_0819 | seryl-tRNA synthetase. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.820 |
SFR34335.1 | thrS | SAMN04490243_0816 | SAMN04490243_2284 | seryl-tRNA synthetase. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.706 |
SFR34335.1 | valS | SAMN04490243_0816 | SAMN04490243_0368 | seryl-tRNA synthetase. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.747 |
SFR34746.1 | SFR34335.1 | SAMN04490243_0880 | SAMN04490243_0816 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | seryl-tRNA synthetase. | 0.719 |
SFR34746.1 | SFR34765.1 | SAMN04490243_0880 | SAMN04490243_0883 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Amino acid adenylation domain-containing protein. | 0.999 |
SFR34746.1 | thrS | SAMN04490243_0880 | SAMN04490243_2284 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.475 |
SFR34765.1 | SFR34335.1 | SAMN04490243_0883 | SAMN04490243_0816 | Amino acid adenylation domain-containing protein. | seryl-tRNA synthetase. | 0.827 |
SFR34765.1 | SFR34746.1 | SAMN04490243_0883 | SAMN04490243_0880 | Amino acid adenylation domain-containing protein. | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | 0.999 |
SFR34765.1 | lysS | SAMN04490243_0883 | SAMN04490243_1611 | Amino acid adenylation domain-containing protein. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.596 |
SFR34765.1 | rsmA | SAMN04490243_0883 | SAMN04490243_0819 | Amino acid adenylation domain-containing protein. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.489 |
SFR34765.1 | thrS | SAMN04490243_0883 | SAMN04490243_2284 | Amino acid adenylation domain-containing protein. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.599 |
page 1 of 3