STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR40061.1Hypothetical protein; Manually curated. (57 aa)    
Predicted Functional Partners:
SFR33733.1
Histidine ammonia-lyase.
  
 
 0.831
SFR40054.1
Protein of unknown function.
       0.624
SFR40071.1
Hypothetical protein.
       0.602
SFR40078.1
1-aminocyclopropane-1-carboxylate deaminase.
       0.598
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
       0.582
SFR40085.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
       0.570
SFR48024.1
Imidazolonepropionase.
  
 
 0.560
SFR31254.1
Imidazolonepropionase.
   
 
  0.545
SFR31455.1
Imidazolonepropionase.
   
 
  0.545
SFR31458.1
Imidazolonepropionase.
   
 
  0.545
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.