STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR45067.1Protein of unknown function. (301 aa)    
Predicted Functional Partners:
SFR45046.1
RNA polymerase Rpb6.
 
     0.933
SFR45037.1
Beta-barrel assembly machine subunit BamD.
 
     0.922
SFR45057.1
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
       0.824
SFR33164.1
Cell surface protein SprA.
  
     0.770
SFR54508.1
Hypothetical protein.
  
     0.761
SFR32091.1
Protein of unknown function.
  
     0.745
SFR32760.1
Chaperone for outer membrane proteins, Skp family.
  
     0.701
SFR45078.1
DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA.
 
     0.692
SFR48574.1
BadF-type ATPase.
  
     0.660
SFR47753.1
Hypothetical protein.
  
     0.652
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.