STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR48729.1Ligand-gated ion channel. (360 aa)    
Predicted Functional Partners:
SFR48735.1
Hypothetical protein.
   
 0.974
SFR32533.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
 0.817
SFR36719.1
Quinoprotein glucose dehydrogenase.
  
 
 0.779
SFR31874.1
Signal transduction histidine kinase.
    
 0.726
SFR46836.1
Signal transduction histidine kinase.
    
 0.726
SFR31759.1
PAS domain S-box-containing protein.
    
 0.688
SFR34090.1
PAS domain S-box-containing protein.
    
 0.688
SFR54628.1
Signal transduction histidine kinase.
    
 0.688
SFR35877.1
Voltage-gated potassium channel.
  
     0.637
SFR45164.1
Voltage-gated potassium channel.
  
     0.592
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.