STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR52489.1DNA-binding transcriptional regulator, AcrR family. (198 aa)    
Predicted Functional Partners:
SFR52481.1
Cupin domain-containing protein.
 
     0.892
SFR52498.1
Sugar phosphate permease; Non-canonical start codon; manually curated.
       0.584
SFR35143.1
DNA-binding transcriptional regulator, MarR family.
  
     0.563
SFR34733.1
Alpha/beta hydrolase family protein.
  
     0.518
SFR49415.1
Hypothetical protein.
  
    0.507
SFR52506.1
D-alanine transaminase.
       0.480
SFR54902.1
Hypothetical protein.
  
     0.464
SFR48437.1
Hypothetical protein.
  
 
   0.448
SFR39600.1
Calcineurin-like phosphoesterase superfamily domain-containing protein.
  
     0.444
SFR52728.1
Hypothetical protein.
  
     0.440
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.