STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR53653.1Beta-carotene 15,15'-monooxygenase, Brp/Blh family; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family. (303 aa)    
Predicted Functional Partners:
SFR53664.1
Bacteriorhodopsin.
 
     0.905
SFR48245.1
DoxX-like family protein.
  
     0.772
SFR49875.1
Hypothetical protein.
  
     0.735
SFR34968.1
Bacteriorhodopsin-like protein.
 
     0.720
SFR48250.1
DoxX-like family protein.
  
     0.717
SFR48236.1
Hypothetical protein.
  
     0.694
SFR35701.1
Protoporphyrinogen oxidase.
 
     0.570
SFR38862.1
Starch-binding associating with outer membrane.
  
     0.530
SFR47287.1
Acyl carrier protein.
  
     0.513
SFR31340.1
CarboxypepD_reg-like domain-containing protein.
  
     0.459
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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