STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR54099.1TonB-linked outer membrane protein, SusC/RagA family. (1080 aa)    
Predicted Functional Partners:
SFR54108.1
Starch-binding associating with outer membrane.
 
 
 
 0.987
SFR54130.1
Hypothetical protein.
 
     0.806
SFR54119.1
Hypothetical protein.
   
   0.796
SFR51267.1
SusD family protein.
  
 
   0.618
SFR38862.1
Starch-binding associating with outer membrane.
  
     0.581
SFR31598.1
Hypothetical protein.
  
     0.553
SFR31625.1
Hypothetical protein.
  
     0.491
SFR50709.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.483
SFR38855.1
Repeat domain-containing protein.
  
     0.482
SFR32260.1
Starch-binding associating with outer membrane.
  
 
   0.481
Your Current Organism:
Robiginitalea myxolifaciens
NCBI taxonomy Id: 400055
Other names: DSM 21019, Flavobacteriaceae bacterium YM6-073, KCTC 22216, MBIC 06409, R. myxolifaciens, Robiginitalea myxolifaciens Manh et al. 2008, strain YM6-073
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